Client Server SSL verification

If you configure OMERO.web behind NGINX with a recognized SSL certificate your users can be sure that they are connecting to their intended server.

OMERO.server and clients do not automatically support host verification, so a man-in-the-middle attack is possible. This may result in users inadvertently transmitting their login credentials to an attacker.

This can be remedied by configuring OMERO.server with a certificate and ensuring all OMERO clients are configured to verify the server certificate before connecting.

Server certificate

The easiest solution is to use the omero-certificates plugin to generate self-signed server certificates alongside their associated configuration. This workflow is described in the particular sections of OMERO.server installation documentation.

Here we describe an alternative option to the usage of the omero-certificates plugin. This option is re-using the SSL certificates used to protect OMERO.web. First convert the public certificate server.pem and private key server.key to the PKCS12 format where secret is the password used to protect the combined output file server.p12:

openssl pkcs12 -export -out server.p12 -in server.pem -inkey server.key -passout pass:secret

Copy server.p12 to the OMERO.server host, for instance to /etc/ssl/omero/.

External access to OMERO.server is managed by the Glacier2 component which can be configured as follows:

omero config set omero.glacier2.IceSSL.Ciphers HIGH
# Look for certificates in this directory, you can omit and use the full path to files instead
omero config set omero.glacier2.IceSSL.DefaultDir /etc/ssl/omero/
omero config set omero.glacier2.IceSSL.CertFile server.p12
omero config set omero.glacier2.IceSSL.Password secret
omero config set omero.glacier2.IceSSL.Protocols tls1_2
omero config set omero.glacier2.IceSSL.ProtocolVersionMin tls1_2
omero config set omero.glacier2.IceSSL.ProtocolVersionMax tls1_2

Restart OMERO.server.

Internal certificate authority

You can also create your own certificates by creating a certificate authority (CA), and using that to create a server certificate. Set this additional server configuration property to point to the public CA certificate /etc/ssl/omero/cacert.pem:

omero config set omero.glacier2.IceSSL.CAs cacert.pem

Zeroc provide the Ice Certificate Utilities package to help create certificates, but if you know what you are doing you can use openssl directly.

Client host verification

At present there is no easy way to configure the standard OMERO clients to require host verification.

If you are a developer the following Ice properties can be passed to the omero.client constructor to force host validation:

  • IceSSL.Ciphers=HIGH

  • IceSSL.VerifyPeer=1

  • IceSSL.VerifyDepthMax=0

  • IceSSL.UsePlatformCAs=1

  • IceSSL.Protocols=tls1_2 (if required by the server configuration)

Some platforms or languages do not support the cipher specification HIGH. Instead you can specify a cipher family such as AES256 or AES_256. See the IceSSL.Ciphers documentation.

If you have your own certificate authority replace IceSSL.UsePlatformCAs with:

  • IceSSL.CAs=/path/to/CA/cacert.pem

These properties check that the certificate chain is valid, but they do not verify that the hostname matches that of the certificate. To verify the hostname either set:

  • IceSSL.CheckCertName=1

If your certificate hostname does not match exactly (for example, if you have a wildcard certificate) use the IceSSL.TrustOnly property instead. Multiple CN can be specified:


Further information