The CLI export command allows you to export data in XML and OME-TIFF formats from an OMERO.server using the command line.
Visit Overview to get a basic overview of the CLI.
Visit Installation to install the CLI.
Currently the export command only supports OME-TIFF, respectively XML.
To export an image as OME-TIFF as file
$ omero export --file image.tif Image:<id>
To export its metadata as file
$ omero export --file image.xml --type XML Image:<id>
Some of the options available to the export command are:
- --iterate Dataset:<id>¶
Iterate over an object and write individual objects to the directory named by –file (EXPERIMENTAL, the only supported object is Dataset:<id>)
$ omero export –file output-dir –iterate Dataset:<id>